Difference between revisions of "User:RBrennan"
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==== Thursday 7/29 (morning) ==== | ==== Thursday 7/29 (morning) ==== | ||
| + | * Worked on paper | ||
| + | * Prepared for meeting | ||
=== Week 9 (7/29 - 8/6) === | === Week 9 (7/29 - 8/6) === | ||
==== Thursday 7/29 (afternoon) ==== | ==== Thursday 7/29 (afternoon) ==== | ||
| + | * Met with Dr. Perouli | ||
| + | ** Talked about paper | ||
| + | * Worked on paper | ||
==== Friday 7/30 ==== | ==== Friday 7/30 ==== | ||
| + | * Worked on paper | ||
==== Monday 8/2 ==== | ==== Monday 8/2 ==== | ||
| + | * Short REU meeting going over last week schedule | ||
| + | * Worked on paper | ||
| + | ** Finished ''Automating Collective Maps'' section | ||
| + | ** Finished ''Comparing Clustering Algorithms'' section | ||
| + | ** Finished ''Implementation'' section | ||
==== Tuesday 8/3 ==== | ==== Tuesday 8/3 ==== | ||
| + | *Worked on paper | ||
| + | ** Finished ''Introduction and Related Work'' section | ||
| + | ** Finished ''Conclusion and Future Work'' section | ||
* '''Poster due''' | * '''Poster due''' | ||
==== Wednesday 8/4 ==== | ==== Wednesday 8/4 ==== | ||
| + | * Worked on presentation | ||
==== Thursday 8/5 ==== | ==== Thursday 8/5 ==== | ||
* Presentations from 10am-12noon | * Presentations from 10am-12noon | ||
** '''Presenting last @ 11:45am''' | ** '''Presenting last @ 11:45am''' | ||
| + | * Poster presentations from 1:30pm-4pm | ||
| + | ** '''Presenting block from 2:30pm-3pm''' | ||
==== Friday 8/6 ==== | ==== Friday 8/6 ==== | ||
* Presentations from 10am-12:15pm | * Presentations from 10am-12:15pm | ||
| − | * Paper due at end of the day | + | * '''Paper due at end of the day''' |
Latest revision as of 14:20, 5 August 2021
Contents
Overview of Schedule
| Week | Tasks | Deliverables |
|---|---|---|
| Week 0 (6/1 - 6/3) | REU Introduction and Bootcamps
Defining schedule, milestones, and goals |
|
| Week 1 (6/3 - 6/10) | Researching existing solutions | Milestones + Goals (due Fri. 6/4) |
| Week 2 (6/10 - 6/17) | Define research problem
Brainstorm solutions |
|
| Week 3 (6/17 - 6/24) | Research and review Dr. Perouli’s work
Define solution path and implementation steps |
|
| Week 4 (6/24 - 7/1) | Start implementation of solution
Put together presentation (Most likely 1 day max) |
Mini Presentations (Wed. 6/30) |
| Week 5 (7/1 - 7/8) | Implementation and refinement | |
| Week 6 (7/8 - 7/15) | Implementation and refinement | |
| Week 7 (7/15 - 7/22) | Test implementation with real data set | |
| Week 8 (7/22 - 7/29) | Finish Project
Work on research deliverables |
|
| Week 9 (7/29 - 8/6) | Finishing Research Deliverables | Formal Presentations (Thu.-Fri. 8/6-8/7)
Research Poster (Thu. 8/6) Research Paper (Fri. 8/7) |
Devote some time every day to formalizing and logging research:
- Summaries of what I’m working on for wiki
- Challenges I’m facing, paths I didn’t take
- Findings and results
- Annotated Bibliography
- Anything else I will forget about when it comes time to work on deliverables
Devote at least half an hour each day to emails, scheduling, and other logistics
2021 Weekly Logs
Week 0 (6/1 - 6/3)
Thursday 5/27
- Met with Dr. Perouli
- Introduced the project
- Discussed first steps
- Discussed goals for the project
Tuesday 6/1
- Attended REU introductions and data science bootcamp
Wednesday 6/2
- Attended data science bootcamp
Thursday 6/3 (morning)
- Attended Good Research Practices Talk with Dr. Brylow
- Outlined milestone and goals for research
- Research ways to characterize sets of multidimensional data
- Determine the best way to do this for concept maps
- Create executable code for the direction we’ve determined is the best
- Create cohesive research deliverables on this topic
- Outlined broad schedule for first 3 weeks
Week 1 (6/3 - 6/10)
Thursday 6/3 (afternoon)
- Met with Dr. Perouli
- Adjusted and finished overview of schedule
- Talked over what previous research I should be looking into
- Discussed the overarching problem I'm looking into
- Created wiki and added schedule
Friday 6/4
- Interviewed Abby Brennan about learning measurement deliverables
- Created thought maps to hone in on research topic
- "Visualizing a group's understanding of a concept"
- File:Brennan ResearchTopic Thought Maps.pdf
Monday 6/7
- Attended Responsible Conduct of Research session
Tuesday 6/8
- Researching other visual representations of understanding
- Researching alternate solutions
- Scoring concept maps
- Representing understanding through artwork
Wednesday 6/9
- Attended technical writing presentation
- Completed session 1 of CITI modules
- Researched more alternate solutions
- Categorized and outlined alternate solutions File:BrennanAlternateSolutions.pdf
- Wrote out questions to be answered for project justification File:BrennanQuestions.pdf
Thursday 6/10 (morning)
- Completed sessions 2 and 3 of CITI Modules
- Scheduled plan and wrote questions for meeting with Dr. Perouli
Week 2 (6/10 - 6/17)
Thursday 6/10 (afternoon)
- Meeting with Dr. Perouli
- Went over work done in week 1
- Discussed my research so far and areas to look further into
- Discussed questions I thought of yesterday
- Discussed goals for week 2
- Looked further into concept map scoring
Friday 6/11
- Researched alternate solutions further and wrote up summaries of relation to project
- Scoring concept maps
- Assessing understanding with machine learning
- Outlined answers for questions posed earlier
Monday 6/14
- Weekly Python coding practice
- Researched ML solutions
Tuesday 6/15
- Organized references in BibTex file
- Wrote annotations for references
Wednesday 6/16
- Finished alternate solutions slides
- Broke it down into Drawbacks, Benefits, and Maturity of the Field
- Added slide for collective concept maps
- Started researching concept map tools
- Listed requirements (wants/needs)
Thursday 6/17 (morning)
- Write-ups for concept map tools
- FreeMind
- MindMup
- Outlined notes for meeting with Dr. Perouli
Week 3 (6/17 - 6/24)
Thursday 6/17 (afternoon)
- Met With Dr. Perouli
- Discussed my work over the last week
- Discussed Plans for upcoming week
- Read through Dr. Perouli's work on collective concept maps
- Read through reviews of the paper
- Researched concept mapping tools
- Focused on file formatting of each application
Friday 6/18
- Outlined program steps from individual maps being created to outputting collective map
- Biggest challenges will be clustering the concepts, stylizing, and creating cluster diagrams (not as necessary)
- Finished write ups for concept mapping tools
- Decided on using CMap
- tested writing sample concept map as propositions and importing to CMap
- Works, but links are forced to have names and positioning of nodes is messy
- most likely have to import tan export again as cxl to fix those things (as well as any style changes)
- Worked on ways to make the map readable
- Some progress but will likely have to revisit this problem later, will have to research minimum crossing number algorithms
Monday 6/21
- Created object types for program
- Concept
- Connection
- Cluster
- ClusterConnection
- Wrote functions to import a folder of .cxl files and convert them to a list of concept and connection objects
Tuesday 6/22
- Broke down steps of program into to-do lists
- Wrote new object classes
- Map
- Cluster
- ClusterConnection
- Node (superclass for Concept and Cluster)
- Moved importing code from its own class to Map class
- Wrote print functions for each list in Map class
- Minor code improvements
Wednesday 6/23
- Started to research solutions for clustering problem
- Attended REU check-in and guest lecture
- Continued coding
- Added function for creating ClusterConnections
- Added functions for tallying Clusters and ClusterConnections
- Annotated existing code
- More minor changes and improvements
Thursday 6/24 (morning)
- Planned meeting with Dr. Perouli
- Edited research slides
Week 4 (6/24 - 7/1)
Thursday 6/24 (afternoon)
- Meeting with Dr. Perouli
- Discussed and asked questions about collective concept map paper
- Discussed concept mapping software choices
- Discussed methods for clustering nodes
- Wrote up more ideas for clustering nodes that came out of meeting
- Instructor Drag and Drop
- Instructor Connect Concepts
- Looked more into pros and cons of yEd and CMap
- yEd file format still very unusable
- yEd can organize nodes in a much better way than CMap
- With inspiration from yEd's circular organization, I think I can create methods to place and organize nodes in the .cxl file
Friday 6/25
- Worked on ideas for a clustering algorithm based on connections
- Relies heavily on nodes and connections being featured in multiple maps
- Probably works best in large groups
- In smaller groups, it would more likely be very star-shaped
Monday 6/28
- Attended REU check-in and presentation presentation
- Conduct of research D2L assignments
Tuesday 6/29
- More work on clustering solutions
- Creating presentation for tomorrow
- Practicing presentation
Wednesday 6/30
- Attended Presentations
- More D2L Assignments
Thursday 7/1 (morning)
- Finished D2L Assignments
- Made a pro-con list to decide between clustering methods
- Decided on implementing my algorithm for now
- Will work on testing and improving the algorithm along the way
- If it doesn't work out, I will return to the drag-and-drop method
Week 5 (7/1 - 7/8)
Thursday 7/1 (afternoon)
- Worked on planning out implementation of clustering algorithm
Friday 7/2
- Off (Moving)
Monday 7/5
- Implementing clustering algorithm
- Came up with a faster solution for checking counts using a table system (adjacency matrix)
- Had to get more specific for tie breakers
- Had to get more specific for order of operations
- Probably need to implement some more error checking
Tuesday 7/6
- Attended presentation by Dr. Zimmer
- Worked on formatting collective map back into .cxl file
- Formatting each element into the right syntax
- Formatting line styling
- Positioning nodes
- Pixel width of nodes
- Circle placement equations
- Experimenting with distances and margins
- What's left to do with formatting
- Creating, writing, and saving .cxl file
- Connection labels
- Formatting metadata
- Title, user info, dates, etc.
Wednesday 7/7
- Attended Dr. Brylow's talk on creating posters
- Continued to work on formatting
- Creating, writing, and saving .cxl files
- Choosing folder UI
- Saving file UI
Thursday 7/8 (morning)
- Wrote notes for meeting with Dr. Perouli
- Looked into Markov clustering as an alternate algorithm to my own
Week 6 (7/8 - 7/15)
Thursday 7/8 (afternoon)
- Meeting with Dr. Perouli
- Looked more into Markov Clustering
- Looked for alternate ways to find the distance to a cluster for my algorithm
Friday 7/9
- Implemented a rough Markov clustering version of the program
Monday 7/12
- Continued Markov Clustering implementation
Tuesday 7/13
- Cleaning up code
- Updating old program to match added features of Markov version
- Updated and added annotations
- Implemented some error checking and small to-do's
Wednesday 7/14
- Attended weekly check-in
- Uploaded code to github
- Outlined testing plan
- Added slider to Markov version user inputs
Thursday 7/15 (morning)
- Prepared for meeting with Dr. Perouli
Week 7 (7/15 - 7/22)
Thursday 7/15 (afternoon)
- Meeting with Dr. Perouli
- Went over steps for testing on camp dataset
- Went over code
- Wrote out more detailed testing plan
Friday 7/16
- Started research poster
- Wrote Section for clustering algorithm options
- Wrote section for implementation
- Wrote acknowledgements
Monday 7/19
- Continued working on poster
- Minor code tweaks
- More testing plans
Tuesday 7/20
- Picked up dataset from Dr. Perouli
- Digitized student data into Cmap
- Wrote ideas on changes to the program to accommodate maps better
- Split commas into separate concepts
- Ignore spaces, punctuation, new lines
- Check for spelling (Might be too hard to implement right now)
- Rerouting links
- One connection between terms per map
- Ignore plurals
- Wrote ideas for suggestions for students
- Avoid sentences, stick to one or two word terms
- Include cybersecurity (one word)
Wednesday 7/21
- Started formatting for paper
- Attended Dr. Brylow's session on graduate school
- Tested functions on real data
- Lots of problems came up
- Fixing problems in code
- Fixed concepts becoming clusters when not supposed to
- Added splitting terms on commas
- Temporarily removed "Extra" clusters while I figure out how to better organize them
- Combined MCL and CCL programs into one for faster editing
- Key functions for the different clustering algorithms have been moved to their own classes
- Other smaller differences are normalized
- User is given the option to choose between methods
Thursday 7/22 (morning)
- Added extra cluster back into output map as a list on the side
- Started writing instructions on how to use Cmap for cybersecurity camp
Week 8 (7/22 - 7/29)
Thursday 7/22 (afternoon)
- Met with Dr. Perouli
- Went over work from last week
- Discussed changes and additions to the program
- discussed to-dos for final two weeks
- Finished Cmap instructions
- More changes to code to adapt for wider array of problems
Friday 7/23
- Started paper
- Some work on poster
Monday 7/26
- Worked on poster
- Finalizing some elements for code
- Final version for now, just need to annotate
Tuesday 7/27
- Worked on paper
- Worked on poster
- Added basic element moving and cluster renaming to program
- Did all the necessary back end additions
- Added a simple UI (Series of drop down menus)
- In the future would want to implement drag-and-drop UI
Wednesday 7/28
- Finished first draft of poster
- Polishing code and updating/adding annotations
Thursday 7/29 (morning)
- Worked on paper
- Prepared for meeting
Week 9 (7/29 - 8/6)
Thursday 7/29 (afternoon)
- Met with Dr. Perouli
- Talked about paper
- Worked on paper
Friday 7/30
- Worked on paper
Monday 8/2
- Short REU meeting going over last week schedule
- Worked on paper
- Finished Automating Collective Maps section
- Finished Comparing Clustering Algorithms section
- Finished Implementation section
Tuesday 8/3
- Worked on paper
- Finished Introduction and Related Work section
- Finished Conclusion and Future Work section
- Poster due
Wednesday 8/4
- Worked on presentation
Thursday 8/5
- Presentations from 10am-12noon
- Presenting last @ 11:45am
- Poster presentations from 1:30pm-4pm
- Presenting block from 2:30pm-3pm
Friday 8/6
- Presentations from 10am-12:15pm
- Paper due at end of the day
