Difference between revisions of "User:Jsu"
From REU@MU
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===Week 1: 5/29=== | ===Week 1: 5/29=== | ||
| − | * | + | *Attended lab orientation and library orientation |
| − | * | + | *Created wiki user page |
| − | * | + | *Researched and practiced different methods of clustering genes on RStudio to determine the best suited method |
| + | *Met with my PhD student mentor for the project, Ziynet, and Dr. Bozdag: discussed papers | ||
===Week 2: 6/4=== | ===Week 2: 6/4=== | ||
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*Read articles and webpages about clustering in R while waiting for clustering code to run | *Read articles and webpages about clustering in R while waiting for clustering code to run | ||
*Finished practicing clustering on RStudio | *Finished practicing clustering on RStudio | ||
| + | *Met with Ziynet and Dr. Bozdag: discussed possible papers to support the pipeline | ||
*Read a paper related to the project's topic | *Read a paper related to the project's topic | ||
| + | *Met with Ziynet: I discussed the paper I read and she told me to practice coexpression and correlation in RStudio | ||
*Began researching and practicing how to calculate coexpression of genes on RStudio | *Began researching and practicing how to calculate coexpression of genes on RStudio | ||
===Week 4: 6/18=== | ===Week 4: 6/18=== | ||
| + | *Finished writing the practice code for determining coexpressed genes | ||
| + | *Met with Ziynet and Dr. Bozdag: discussed possible pipelines for the project | ||
| + | *Read two papers related to the project's topic | ||
| + | *Met with Ziynet: I discussed the two papers I read | ||
| + | *Began researching how to determine the correlation between two different genomic datatypes | ||
| + | *Began writing the practice code for determining correlation between mRNA and miRNA | ||
===Week 5: 6/25=== | ===Week 5: 6/25=== | ||
Revision as of 15:22, 21 June 2018
Contents
Week 1: 5/29
- Attended lab orientation and library orientation
- Created wiki user page
- Researched and practiced different methods of clustering genes on RStudio to determine the best suited method
- Met with my PhD student mentor for the project, Ziynet, and Dr. Bozdag: discussed papers
Week 2: 6/4
- RStudio on desktop kept freezing so requested for an account on the server
- Read related papers to see what clustering methods other studies used while waiting for code to run
- Read proposal for project
- Read papers similar to the project's topic
- Explored and read about different R clustering packages
- Completed the three RCR training modules
Week 3: 6/11
- Read articles and webpages about clustering in R while waiting for clustering code to run
- Finished practicing clustering on RStudio
- Met with Ziynet and Dr. Bozdag: discussed possible papers to support the pipeline
- Read a paper related to the project's topic
- Met with Ziynet: I discussed the paper I read and she told me to practice coexpression and correlation in RStudio
- Began researching and practicing how to calculate coexpression of genes on RStudio
Week 4: 6/18
- Finished writing the practice code for determining coexpressed genes
- Met with Ziynet and Dr. Bozdag: discussed possible pipelines for the project
- Read two papers related to the project's topic
- Met with Ziynet: I discussed the two papers I read
- Began researching how to determine the correlation between two different genomic datatypes
- Began writing the practice code for determining correlation between mRNA and miRNA
