User:Jsu
From REU@MU
Contents
Week 1: 5/29
- Attended lab orientation and library orientation
- Created wiki user page
- Researched and practiced different methods of clustering genes on RStudio to determine the best suited method
- Met with my PhD student mentor for the project, Ziynet, and Dr. Bozdag: discussed papers
Week 2: 6/4
- RStudio on desktop kept freezing so requested for an account on the server
- Read related papers to see what clustering methods other studies used while waiting for code to run
- Read proposal for project
- Read papers similar to the project's topic
- Explored and read about different R clustering packages
- Completed the three RCR training modules
Week 3: 6/11
- Read articles and webpages about clustering in R while waiting for clustering code to run
- Finished practicing clustering on RStudio
- Met with Ziynet and Dr. Bozdag: discussed possible papers to support the pipeline
- Read a paper related to the project's topic
- Met with Ziynet: I discussed the paper I read and she told me to practice coexpression and correlation in RStudio
- Began researching and practicing how to calculate coexpression of genes on RStudio
Week 4: 6/18
- Finished writing the practice code for determining coexpressed genes
- Met with Ziynet and Dr. Bozdag: discussed possible pipelines for the project
- Read two papers related to the project's topic
- Met with Ziynet: I discussed the two papers I read
- Began researching how to determine the correlation between two different genomic datatypes
- Began writing the practice code for determining correlation between mRNA and miRNA
