Difference between revisions of "User:Jsu"

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===Week 1: 5/29===
 
===Week 1: 5/29===
*Attend lab orientation and library orientation
+
*Attended lab orientation and library orientation
*Create wiki user page
+
*Created wiki user page
*Research and practice different methods of clustering genes on RStudio to determine the best suited method
+
*Researched and practiced different methods of clustering genes on RStudio to determine the best suited method
 +
*Met with my PhD student mentor for the project, Ziynet, and Dr. Bozdag: discussed papers
  
 
===Week 2: 6/4===
 
===Week 2: 6/4===
Line 15: Line 16:
 
*Read articles and webpages about clustering in R while waiting for clustering code to run
 
*Read articles and webpages about clustering in R while waiting for clustering code to run
 
*Finished practicing clustering on RStudio
 
*Finished practicing clustering on RStudio
 +
*Met with Ziynet and Dr. Bozdag: discussed possible papers to support the pipeline
 
*Read a paper related to the project's topic
 
*Read a paper related to the project's topic
 +
*Met with Ziynet: I discussed the paper I read and she told me to practice coexpression and correlation in RStudio
 
*Began researching and practicing how to calculate coexpression of genes on RStudio
 
*Began researching and practicing how to calculate coexpression of genes on RStudio
  
 
===Week 4: 6/18===
 
===Week 4: 6/18===
 +
*Finished writing the practice code for determining coexpressed genes
 +
*Met with Ziynet and Dr. Bozdag: discussed possible pipelines for the project
 +
*Read two papers related to the project's topic
 +
*Met with Ziynet: I discussed the two papers I read
 +
*Began researching how to determine the correlation between two different genomic datatypes
 +
*Began writing the practice code for determining correlation between mRNA and miRNA
  
 
===Week 5: 6/25===
 
===Week 5: 6/25===

Revision as of 15:22, 21 June 2018

Week 1: 5/29

  • Attended lab orientation and library orientation
  • Created wiki user page
  • Researched and practiced different methods of clustering genes on RStudio to determine the best suited method
  • Met with my PhD student mentor for the project, Ziynet, and Dr. Bozdag: discussed papers

Week 2: 6/4

  • RStudio on desktop kept freezing so requested for an account on the server
  • Read related papers to see what clustering methods other studies used while waiting for code to run
  • Read proposal for project
  • Read papers similar to the project's topic
  • Explored and read about different R clustering packages
  • Completed the three RCR training modules

Week 3: 6/11

  • Read articles and webpages about clustering in R while waiting for clustering code to run
  • Finished practicing clustering on RStudio
  • Met with Ziynet and Dr. Bozdag: discussed possible papers to support the pipeline
  • Read a paper related to the project's topic
  • Met with Ziynet: I discussed the paper I read and she told me to practice coexpression and correlation in RStudio
  • Began researching and practicing how to calculate coexpression of genes on RStudio

Week 4: 6/18

  • Finished writing the practice code for determining coexpressed genes
  • Met with Ziynet and Dr. Bozdag: discussed possible pipelines for the project
  • Read two papers related to the project's topic
  • Met with Ziynet: I discussed the two papers I read
  • Began researching how to determine the correlation between two different genomic datatypes
  • Began writing the practice code for determining correlation between mRNA and miRNA

Week 5: 6/25

Week 6: 7/2

Week 7: 7/9

Week 8: 7/16

Week 9: 7/23

Week 10: 7/30