Difference between revisions of "(i,j)-step competition graphs"
Maxblack45 (Talk | contribs) |
Maxblack45 (Talk | contribs) (→Objectives) |
||
(30 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
− | '''Researchers:''' [[User:Maxblack45|Max Black]] | + | '''Researchers:''' [[User:Babcock|Carissa Babcock]] and [[User:Maxblack45|Max Black]] |
'''Mentor:''' [http://www.marquette.edu/mscs/facstaff-factor.shtml Dr. Kim A.S. Factor] | '''Mentor:''' [http://www.marquette.edu/mscs/facstaff-factor.shtml Dr. Kim A.S. Factor] | ||
=='''Background'''== | =='''Background'''== | ||
+ | [[File:Graphs.jpg|500px|thumb|right|Here are some tournaments (top row) and their corresponding (''1,2'')-step competition graphs (bottom row) found in the (''1,2'')-step competition graph of a tournament paper by Factor and Merz.]] | ||
− | Cohen, in 1968, began modeling ecosystems with competition graphs | + | Joel E. Cohen, in 1968, began modeling ecosystems with competition graphs; consequently, mathematicians began developing his new mathematical object. Informally, competition graphs are collections of dots and lines representing some "competitive" relationship between two species, players, companies, etc. Formally, if we let "let ''D'' be a directed graph having no multiple edges, the competition graph of ''D'' is an undirected graph G on the same node set as ''D'' and having an undirected edge ''{u<sub>i</sub>, v<sub>j</sub>}'' if and only if there exists a third node ''u''<sub>k</sub> such that ''{v<sub>i</sub>, v<sub>k</sub>}'' and ''{v<sub>j</sub>, u<sub>k</sub>}'' are directed edges in the edge set of ''D'' "[http://reu.mscs.mu.edu/images/3/38/CharacterizingCompetitionGraphs.pdf (Dutton et al)]. Competition graphs, when applied to ecosystems, illuminate previously mysterious properties regarding a community through portraying relationships between species. The relationships they portray help identify primary and secondary extinctions between species, when exploring them. |
+ | |||
+ | (''1,2'')-step competition graphs expand on competition graphs. We know from Dr. Factor and Dr. Merz's paper, ''The (1,2)-step competition graph of a tournament'', that the competition graph of a digraph ''D'' is contained in (a subgraph of) the (''1,2'')-step competition graph on D. Specifically, (''1,2'')-step competition graphs clearly display direct and indirect relationships between vertices; in the language of ecosystems, they display the direct and indirect relationships (up to length 2) between various species within a community. Our formal definition for these graphs comes from Factor and Merz's paper: "the (''1,2'')-step competition graph of a digraph ''D'', denoted ''C<sub>1,2</sub>(D)'', is a graph on ''V(D)'' where ''{x,y}'' in ''E(C<sub>1,2</sub>(D))'' if and only if there exists a vertex ''z'' not equal to ''x,y'', such that either ''d<sub>D-y</sub>''(x,z) less than or equal to 1 and ''d<sub>D-x</sub>''(y,z) is less than or equal to 2 [or vice versa]." The (''1,2'')-step competition graph is generalized by the (''i,j'')-step graph. | ||
+ | |||
+ | (''i,j'')-step graphs display relationships between vertices of an arbitrary length. That is, since they generalize (''1,2'')-step competition graphs, our formal definition comes, again, from Factor and Merz's paper: "the (''i,j'')-step competition graph of a digraph ''D'', denoted ''C<sub>i,j</sub>(D)'', is a graph on ''V(D)'' where ''{x,y}'' in ''E(C<sub>i,j</sub>(D))'' if and only if there exists a vertex ''z'' not equal to ''x,y'', such that either ''d<sub>D-y</sub>''(x,z) less than or equal to ''i'' and ''d<sub>D-x</sub>''(y,z) is less than or equal to ''j'' [or vice versa]". In the (''1,2'')-step competition graph, we saw indirect relationships up to 2; with the (''i,j'')-step competition graph, we can identify indirect relationships up to '' i'' and ''j''. For instance, we could let ''i'' = 1, preserving direct relationships, and let ''j'' be the value of ''how'' indirect of relationships we want to observe. Thus, with the (''i,j'')-step graph, we control the relationships we want to see. | ||
+ | |||
+ | This project has two main goals: expanding the theory for (''i,j'')-step graphs and exploring their applications. For expanding their theory, this project may explore generalizations, applications to various families of graphs, or explorations with hypergraphs. Concerning their applications, this project may examine and implement various (1,2)-step competition graphs directed towards explaining various relations between species, explaining primary and secondary extinctions, or explaining potential for extinctions within various communities. Throughout the summer, the researchers will take this project in the directions they see fit. | ||
=='''Objectives'''== | =='''Objectives'''== | ||
− | |||
During this project, we will examine and explore the following: | During this project, we will examine and explore the following: | ||
− | |||
− | <ol style="margin-left: | + | <ol style="margin-left: 5em;"> |
<li>Previous research regarding competition graphs and (1,2)-step competition graphs of food webs</li> | <li>Previous research regarding competition graphs and (1,2)-step competition graphs of food webs</li> | ||
<li>Competition graphs and (1,2)-step competition graphs of a specific food web</li> | <li>Competition graphs and (1,2)-step competition graphs of a specific food web</li> | ||
</ol> | </ol> | ||
− | |||
Additionally, we will further previous research by doing the following: | Additionally, we will further previous research by doing the following: | ||
− | |||
− | <ol style="margin-left: | + | <ol style="margin-left: 5em;"> |
<li>Furthering research on (i,j)-step competition graphs by exploring new theory and computation</li> | <li>Furthering research on (i,j)-step competition graphs by exploring new theory and computation</li> | ||
<li>Applying competition graphs and (i,j)-step competition graphs in new areas</li> | <li>Applying competition graphs and (i,j)-step competition graphs in new areas</li> | ||
</ol> | </ol> | ||
− | |||
A brief overview of our goals for this 10 week process are listed below. For a complete list of our goals, click [http://reu.mscs.mu.edu/images/2/2a/Milestones.pdf here]. | A brief overview of our goals for this 10 week process are listed below. For a complete list of our goals, click [http://reu.mscs.mu.edu/images/2/2a/Milestones.pdf here]. | ||
− | |||
{| class="wikitable" | {| class="wikitable" | ||
|- | |- | ||
− | |Week || Description | + | |'''Week''' || '''Description''' |
|- | |- | ||
!Week 1 (5/30/17-6/2/17): Orientation and Introductions | !Week 1 (5/30/17-6/2/17): Orientation and Introductions | ||
Line 39: | Line 40: | ||
*Complete the education mdule, ''The Biology and Mathematics of Food Webs'', by '''Thursday, 6/1/17''' | *Complete the education mdule, ''The Biology and Mathematics of Food Webs'', by '''Thursday, 6/1/17''' | ||
*Attend the talk at '''11:00PM in CU 401''' | *Attend the talk at '''11:00PM in CU 401''' | ||
− | *Enter the title, description and milestones/goals into the wiki by '''Friday, 6/2 | + | *Enter the title, description and milestones/goals into the wiki by '''Friday, 6/2''', by midnight |
− | + | ||
*Read ''(1,2)-step competition graph of a tournament'' and have questions ready for Wednesday, 6/7/2017 | *Read ''(1,2)-step competition graph of a tournament'' and have questions ready for Wednesday, 6/7/2017 | ||
+ | *Update Wiki at end of week or during week to reflect on what has been accomplished | ||
|- | |- | ||
!Week 2 (6/5/17-6/9/17): Experiment with (1,2)-Step Competition Graphs Using Specific Examples | !Week 2 (6/5/17-6/9/17): Experiment with (1,2)-Step Competition Graphs Using Specific Examples | ||
Line 62: | Line 63: | ||
*Begin thinking about individual research questions. Discuss these during the Tuesday and Thursday meetings | *Begin thinking about individual research questions. Discuss these during the Tuesday and Thursday meetings | ||
*Write up findings in LaTeX | *Write up findings in LaTeX | ||
− | **Experiment with creating small food webs and competition graphs in LaTeX | + | **Experiment with creating small food webs and competition graphs in LaTeX (Carissa) |
+ | *Edit definitions | ||
*Update Wiki at end of week or during week to reflect on what has been accomplished | *Update Wiki at end of week or during week to reflect on what has been accomplished | ||
|- | |- | ||
Line 72: | Line 74: | ||
*Attend the luncheon at '''11:30 AM on Thursday, 6/22''' | *Attend the luncheon at '''11:30 AM on Thursday, 6/22''' | ||
*Meet with Dr. Factor on '''Thursday, 6/22,''' focus will be on what to put on slides for next week's mini-presentations | *Meet with Dr. Factor on '''Thursday, 6/22,''' focus will be on what to put on slides for next week's mini-presentations | ||
− | *Update Wiki at end of week or during week to reflect what has been accomplished | + | *Update Wiki at end of week or during week to reflect on what has been accomplished |
|- | |- | ||
!Week 5 (6/26/17-6/30/17): Mini Presentations | !Week 5 (6/26/17-6/30/17): Mini Presentations | ||
Line 80: | Line 82: | ||
*Present mini-presentation to peers and mentors on '''Thursday, 6/29''' | *Present mini-presentation to peers and mentors on '''Thursday, 6/29''' | ||
*Short meeting with mentor after mini-presentations | *Short meeting with mentor after mini-presentations | ||
− | *Update Wiki at end of week or during week to reflect what has been accomplished | + | *Update Wiki at end of week or during week to reflect on what has been accomplished |
|- | |- | ||
!Week 6 (7/3/17-7/7/17): Continue Individual research | !Week 6 (7/3/17-7/7/17): Continue Individual research | ||
Line 87: | Line 89: | ||
*Meet with mentor on '''Thursday, 7/6''' to give research updates and discuss research direction | *Meet with mentor on '''Thursday, 7/6''' to give research updates and discuss research direction | ||
*Atend working lunch at '''11:30 AM on Thursday, 7/6'''; includes talk on making an effective poster | *Atend working lunch at '''11:30 AM on Thursday, 7/6'''; includes talk on making an effective poster | ||
− | *Update Wiki at end of week or during week to reflect what has been accomplished | + | *Update Wiki at end of week or during week to reflect on what has been accomplished |
|- | |- | ||
!Week 7 (7/10/17-7/14/17): Resolve Conjectures | !Week 7 (7/10/17-7/14/17): Resolve Conjectures | ||
Line 96: | Line 98: | ||
*Meet with Dr. Factor on '''Thursday, 7/13''' | *Meet with Dr. Factor on '''Thursday, 7/13''' | ||
*Paper outline (brief) based on last week and this week's meetings, submit to Dr. Factor via email by '''Friday, 7/14''' by '''5:00 PM''' | *Paper outline (brief) based on last week and this week's meetings, submit to Dr. Factor via email by '''Friday, 7/14''' by '''5:00 PM''' | ||
− | *Update Wiki at end of week or during week to reflect what has been accomplished | + | *Update Wiki at end of week or during week to reflect on what has been accomplished |
|- | |- | ||
!Week 8 (7/17/17-7/21/17): Begin Finalizing Paper | !Week 8 (7/17/17-7/21/17): Begin Finalizing Paper | ||
Line 104: | Line 106: | ||
*Initialize poster draft and email to Dr. Factor by '''Thursday, 7/20''' in time for mentor meeting | *Initialize poster draft and email to Dr. Factor by '''Thursday, 7/20''' in time for mentor meeting | ||
*Participate in working luncheon on '''Thursday, 7/20''' | *Participate in working luncheon on '''Thursday, 7/20''' | ||
− | *Update Wiki at end of week or during week to reflect what has been accomplished | + | *Update Wiki at end of week or during week to reflect on what has been accomplished |
| | | | ||
|- | |- | ||
Line 115: | Line 117: | ||
*Begin turning LaTeX writing into formal paper | *Begin turning LaTeX writing into formal paper | ||
*Go to luncheon on '''Thursday, 7/30''' | *Go to luncheon on '''Thursday, 7/30''' | ||
− | *Update Wiki at end of week or during week to reflect what has been accomplished | + | *Update Wiki at end of week or during week to reflect on what has been accomplished |
|- | |- | ||
!Week 10 (7/31/17-8/4/17): Formal Talks, Posters, Papers, and Goodbyes | !Week 10 (7/31/17-8/4/17): Formal Talks, Posters, Papers, and Goodbyes | ||
Line 121: | Line 123: | ||
*Draft formal talk, which is due to Dr. Factor bu '''11:00 AM Monday, 7/31''' | *Draft formal talk, which is due to Dr. Factor bu '''11:00 AM Monday, 7/31''' | ||
*Draft paper, which is due to Dr. Factor by '''11:00 AM Thursday, 8/3''' | *Draft paper, which is due to Dr. Factor by '''11:00 AM Thursday, 8/3''' | ||
− | *Update Wiki at end of week or during week to reflect what has been accomplished | + | *Attend poster session '''1:00 PM - 3:00 PM on Tuesday, 8/1''' |
+ | *Formal presentations | ||
+ | **'''Wednesday, 8/5, 10:00-2:00, CU 401''' | ||
+ | **'''Thursday, 8/6, 10:00-12:00, CU 401''' | ||
+ | *Paper due electronically '''Friday, 8/4''' by '''midnight''', sent to Dr. Brylow | ||
+ | *Update Wiki at end of week or during week to reflect on what has been accomplished | ||
|- | |- | ||
|} | |} | ||
+ | |||
+ | =='''Research Logs'''== | ||
+ | |||
+ | Each researcher keeps a log of the entire process, including reflections at the end of the week. These logs demonstrate the researcher's actual progress on their respective projects. Specifically, this determines whether or not they are actually reaching their milestones and completing their goals. If you would like to read them, click the researcher's name: [[User:Babcock|Carissa Babcock]] or [[User:maxblack45|Max Black]]. |
Latest revision as of 18:07, 15 June 2017
Researchers: Carissa Babcock and Max Black
Mentor: Dr. Kim A.S. Factor
Background
Joel E. Cohen, in 1968, began modeling ecosystems with competition graphs; consequently, mathematicians began developing his new mathematical object. Informally, competition graphs are collections of dots and lines representing some "competitive" relationship between two species, players, companies, etc. Formally, if we let "let D be a directed graph having no multiple edges, the competition graph of D is an undirected graph G on the same node set as D and having an undirected edge {ui, vj} if and only if there exists a third node uk such that {vi, vk} and {vj, uk} are directed edges in the edge set of D "(Dutton et al). Competition graphs, when applied to ecosystems, illuminate previously mysterious properties regarding a community through portraying relationships between species. The relationships they portray help identify primary and secondary extinctions between species, when exploring them.
(1,2)-step competition graphs expand on competition graphs. We know from Dr. Factor and Dr. Merz's paper, The (1,2)-step competition graph of a tournament, that the competition graph of a digraph D is contained in (a subgraph of) the (1,2)-step competition graph on D. Specifically, (1,2)-step competition graphs clearly display direct and indirect relationships between vertices; in the language of ecosystems, they display the direct and indirect relationships (up to length 2) between various species within a community. Our formal definition for these graphs comes from Factor and Merz's paper: "the (1,2)-step competition graph of a digraph D, denoted C1,2(D), is a graph on V(D) where {x,y} in E(C1,2(D)) if and only if there exists a vertex z not equal to x,y, such that either dD-y(x,z) less than or equal to 1 and dD-x(y,z) is less than or equal to 2 [or vice versa]." The (1,2)-step competition graph is generalized by the (i,j)-step graph.
(i,j)-step graphs display relationships between vertices of an arbitrary length. That is, since they generalize (1,2)-step competition graphs, our formal definition comes, again, from Factor and Merz's paper: "the (i,j)-step competition graph of a digraph D, denoted Ci,j(D), is a graph on V(D) where {x,y} in E(Ci,j(D)) if and only if there exists a vertex z not equal to x,y, such that either dD-y(x,z) less than or equal to i and dD-x(y,z) is less than or equal to j [or vice versa]". In the (1,2)-step competition graph, we saw indirect relationships up to 2; with the (i,j)-step competition graph, we can identify indirect relationships up to i and j. For instance, we could let i = 1, preserving direct relationships, and let j be the value of how indirect of relationships we want to observe. Thus, with the (i,j)-step graph, we control the relationships we want to see.
This project has two main goals: expanding the theory for (i,j)-step graphs and exploring their applications. For expanding their theory, this project may explore generalizations, applications to various families of graphs, or explorations with hypergraphs. Concerning their applications, this project may examine and implement various (1,2)-step competition graphs directed towards explaining various relations between species, explaining primary and secondary extinctions, or explaining potential for extinctions within various communities. Throughout the summer, the researchers will take this project in the directions they see fit.
Objectives
During this project, we will examine and explore the following:
- Previous research regarding competition graphs and (1,2)-step competition graphs of food webs
- Competition graphs and (1,2)-step competition graphs of a specific food web
Additionally, we will further previous research by doing the following:
- Furthering research on (i,j)-step competition graphs by exploring new theory and computation
- Applying competition graphs and (i,j)-step competition graphs in new areas
A brief overview of our goals for this 10 week process are listed below. For a complete list of our goals, click here.
Week | Description | |
Week 1 (5/30/17-6/2/17): Orientation and Introductions |
| |
---|---|---|
Week 2 (6/5/17-6/9/17): Experiment with (1,2)-Step Competition Graphs Using Specific Examples |
| |
Week 3 (6/12/17-6/16/17): Formulating Research Questions |
| |
Week 4 (6/19/17-6/23/17): Refine Research |
| |
Week 5 (6/26/17-6/30/17): Mini Presentations |
| |
Week 6 (7/3/17-7/7/17): Continue Individual research |
| |
Week 7 (7/10/17-7/14/17): Resolve Conjectures |
| |
Week 8 (7/17/17-7/21/17): Begin Finalizing Paper |
|
|
Week 9 (7/24/17-7/28/17): Posters and Future Research (Dr. Factor Out of Town) |
| |
Week 10 (7/31/17-8/4/17): Formal Talks, Posters, Papers, and Goodbyes |
|
Research Logs
Each researcher keeps a log of the entire process, including reflections at the end of the week. These logs demonstrate the researcher's actual progress on their respective projects. Specifically, this determines whether or not they are actually reaching their milestones and completing their goals. If you would like to read them, click the researcher's name: Carissa Babcock or Max Black.